You know, I get what you're saying. It definitely is ingrained in our society that skin color says more about a person. I also think it's not wise to say we should just ignore it altogether.
The way my mind deals with it, honestly, is to create a new character with a slightly different personality. Instead of asking why they did it in the first place, I just try to acknowledge that it's not the same character I'm expecting. If it's a remake of something, it probably won't be the same story I'm expecting either.
It's like a multiverse thing. The problem only comes if you're comparing the old to the new. So I try to avoid that.
But it isn't wrong to say that your perception of a character changes with their skin color, because society conditioned us like that. It's up to you to create a new perception though. It really only becomes wrong when you say that a character's skin color breaks your perception of them because it's unacceptable. Does that make sense?